烟草野火病叶际微生物群落结构多样性与碳源代谢表征
摘要:
为明确感染烟草野火病叶片结构及叶际微生物形态、碳源代谢能力和群落结构多样性特征,分别采用扫描电镜、BIOLOG ECO和Illumina NovaSeq高通量测序技术研究了感病烟叶与健康烟叶的叶片结构、叶际细菌和真菌群落结构的差异。结果表明,感病烟叶表面附着大量细菌、真菌及菌丝和孢子,烟草叶片受损严重。感病烟叶叶际微生物群落对羧酸类物质(丙酮酸甲酯和D-苹果酸等)的利用能力最强,健康烟叶叶际微生物群落对聚合物(Tween-40和Tween-80等)的利用能力最强,两组烟叶叶际微生物群落均不能高效利用酚类化合物(2-羟基苯甲酸和4-羟基苯甲酸)。感病和健康烟叶叶际细菌和真菌在门水平上差异不显著,但在属水平上差异显著。其中,感病烟叶的优势细菌属为假单胞菌属(Pseudomonas,67.43%)和泛菌属(Pantoea,5.75%),健康烟叶的优势细菌属为劳尔氏菌属(Ralstonia,17.62%)、假单胞菌属(15.79%)和反刍杆菌属(Ruminobacter,12.76%);感病烟叶的优势真菌属为茎点霉属(Phoma,24.68%)、链格孢属(Alternaria,22.87%)和Phialocephala(5.72%),健康烟叶的优势真菌属为枝孢属(Cladosporium,14.80%)、Sampaiozyma(8.19%)和被孢霉属(Mortierella,5.23%)。感病烟叶和健康烟叶叶际细菌和真菌的多样性、丰富度等均存在显著差异,暗示着烟草野火病的发生存在假单胞菌等细菌与茎点霉等真菌的复合侵染。
Abstract:
To clarify the characteristics of leaf structure and phyllosphere microbial morphology, carbon source metabolic capacity, and community structure diversity for tobacco leaves affected by wildfire disease, scanning electron microscopy, BIOLOG ECO, and Illumina NovaSeq high-throughput sequencing technologies were used to investigate the differences in leaf structure, phyllosphere bacteria and fungal communities between infected and healthy tobacco leaves. The results showed that a significant number of bacterial hyphae, fungal hyphae, and spores adhered to the surfaces of infected tobacco leaves that were severely damaged. The phyllosphere microbial communities of the infected tobacco leaves had the highest utilization capacity for carboxylic acids (methyl pyruvate and D-malate, etc.), whereas those of healthy tobacco leaves had the highest utilization capacity for polymers (Tween-40 and Tween-80, etc.). Both leaf groups were inefficient in the utilization of phenolic compounds (2-hydroxybenzoic acid and 4-hydroxybenzoic acid). Although no significant differences were observed in the phyllosphere bacterial and fungal communities between the infected and healthy tobacco leaves at phylum level, significant differences were observed at the genus level. Dominant bacterial genera of the infected tobacco leaves were Pseudomonas (67.43%) and Pantoea (5.75%), whereas Ralstonia (17.62%), Pseudomonas (15.79%) and Ruminobacter (12.76%) dominated in the healthy samples. Dominant fungal genera were Phoma (24.68%), Alternaria (22.87%) and Phialocephala (5.72%) on the infected tobacco leaves, whereas Cladosporium (14.80%), Sampaiozyma (8.19%) and Mortierella (5.23%) on the healthy tobacco leaves. Significant differences in diversity and richness between phyllosphere bacterial and fungal communities of the infected and healthy tobacco leaves indicated that a composite infection of bacteria such as Pseudomonas spp. and fungi such as Phoma spp. contributed to the progression of tobacco wildfire disease.
图 1 不同症状烟叶的形态扫描电镜观察与特征比较
A和B为感病烟叶正面危害症状,C和D为感病烟叶背面危害症状;a为健康烟叶表面电镜组织形态,b、c、d均为感病烟叶表面组织形态。
Fig. 1 Morphological observation by scanning electron microscopy and characterization of tobacco leaves with different symptoms
图 2 健康烟叶与感病烟叶叶际微生物的碳源代谢图谱
图例颜色表示Biolog OmniLog R系统AWCD值的大小。
Fig. 2 Carbon source metabolism map of phyllosphere microorganisms of infected and healthy tobacco leaves
图 3 健康(LPSJ)和感病(LPSB)烟叶样品细菌(A)和真菌(B)ASV分布Venn图
Fig. 3 Venn diagrams of ASV distribution for bacteria (A) and fungi (B) in healthy (LPSJ) and infected (LPSB) tobacco leaf samples
图 4 健康与感病烟叶叶际细菌(A)、真菌(B)物种进化树与细菌门(C)、属(E)和真菌门(D)、属(F)水平组间的相对丰度
A、B左侧图例为样本信息,右侧图例为属水平物种对应的门水平的分类信息;图C、D、E、F图例中Others表示图中10个门/属之外的其他所有门/属的相对丰度之和。
Fig. 4 Evolutionary trees of phyllosphere microorganisms, bacteria (A) and fungi (B), on healthy and infected tobacco leaves, and relative abundances of bacterial phylum (C), bacterial genus (E), fungal phylum (D) and fungal genus (F) groups
图 5 健康(LPSJ)和感病(LPSB)烟叶样本中细菌(A)与真菌(B)群落的主成分分析(PCA)
横坐标表示第一主成分,纵坐标表示第二主成分,百分比表示主成分对样本差异的贡献值。
Fig. 5 Principal component analysis (PCA) of bacterial (A) and fungal (B) communities of healthy (LPSJ) and infected (LPSB) tobacco leaf samples
图 6 细菌与真菌群落组间进化分支图与LDA值分布柱形图
A.细菌进化分支图;B.细菌LDA分布图;C.真菌进化分支图;D.真菌LDA分布图。在进化分支图中,由内至外辐射的圆圈代表了由门至属(或种)的分类级别。在不同分类级别上的每一个小圆圈代表该水平下的一个分类,小圆圈直径大小与相对丰度大小呈正比。LDA值分布柱状图中展示了LDA score大于设定值(默认设置为4)的物种,即组间具有统计学差异的Biomarker。
Fig. 6 Intergroup evolutionary branching diagrams of bacterial and fungal communities and bar charts of LDA value distribution
表 1 不同烟叶样品的序列数据
Tab. 1 Sequence data of different tobacco leaf samples
样品 有效序列/条 碱基数/nt 平均长度/nt 细菌 真菌 细菌 真菌 细菌 真菌 LPSB1 76 812 55 540 31 194 278 14 315 321 406 258 LPSB2 82 984 65 834 33 823 340 15 949 946 408 242 LPSB3 60 323 72 532 25 132 199 15 306 587 417 211 LPSB4 75 970 64 386 31 145 999 13 647 568 410 212 LPSJ1 70 754 64 143 28 782 147 17 015 930 407 265 LPSJ2 83 541 70 913 33 943 411 17 923 390 406 253 LPSJ3 68 900 68 345 28 034 166 17 345 137 407 254 LPSJ4 85 154 69 099 34 582 234 15 719 312 406 227表 2 样品组间α多样性指数①
Tab. 2 Alpha diversity index between sample groups
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